p  1

A mathematical model of arginine biosynthesis in Escherichia coli.

Marina Caldara (Vrije Universiteit Brussel, Belgium)

p  2

MEMORE - metabolic modelling of E. coli for the production of chemicals from renewable resources.

Karl Rumbold (Ghent University, Belgium)

p  3

Engineering Escherichia coli to increase the flux of reducing equivalents available for NAD(P)H-dependent transformations.

Patrick C. Cirino (Pennsylvania State University, USA)

p  4

Proteomic profiling of recombinant Escherichia coli that overexpresses a double-tagged fusion protein.

Chung-Hsien Cheng (National Chung Cheng University, Taiwan)

p  5

Comparative genome sequencing of Escherichia coli BL21(DE3).

Haeyoung Jeong (Korea Research Institute of Bioscience and Biotechnology, Korea)

p  6

Genome-scale reconstruction of the transcriptional and translational machinery of Escherichia Coli: the “Dogma matrix”.

Ines Thiele (University of California, USA)

p  7

Core essential genes and genome structure of Escherichia coli K-12.

Tomoya Baba (Nara Institute of Science and Technology, USA)

p  8

A novel expression analysis method using single-strand conformation polymorphism based on capillary electrophoresis.

Sang Woo Seo (Pohang University of Science and Technology, Korea)

p  9

Comparative analysis of the genomes of Escherichia coli REL606 and clones evolved for 20,000 generations.

Dong-Su Yu (Korea Research Institute of Bioscience and Biotechnology, Korea)

p 10

Application of genome-scale models to the optimization of recombinant protein production in Escherichia coli.

Isabel Rocha (Universidade do Minho, Portugal)

p 11

Systemic evolution of cold-resistance in Escherichia coli.

Sung In Lim (Pohang University of Science and Technology, Korea)

p 12

Attempt to express topological position of individual metabolites in the whole metabolic network of Escherichia coli.

Jun Ohta (Okayama University, Japan)

p 13

Finding perturbation corresponding active path by integrating genetic regulatory network and metabolic pathway.

Ho Jung Nam (Korea Advanced Institute Science and Technology, Korea)

p 14

Kinetic model of the enzyme I of the phophoenolpyruvate-dependent phosphotransferase system.

Tatyana Karelina (A.N. Belozersky Institute of Physical-Chemical Biology, Russia)

p 15

A genome-scale metabolic reconstruction of Escherichia coli K-12 MG1655: A curated framework for systems analysis.

Adam M. Feist (University of California–San Diego, USA)

p 16

Enhanced production of L-threonine based on in silico simulation and comparative transcriptome analysis.

Kwang Ho Lee (Korea Advanced Institute of Science and Technology, Korea)

p 17

Genome-scale in silico model of photosynthetic microorganism, Synechocystis PCC6803.

Choul-Gyun Lee (Inha University, Korea)

p 18

Application of protein-protein interaction network database to metabolic flux models.

Peter Kuan-Yeu Pan (National Tsing Hua University, Taiwan)

p 19

Prediction of transcriptional regulation elements of Escherichia coli B REL606.

Ho-Young Kang (Korea Research Institute of Bioscience and Biotechnology, Korea)

p 20

Analysis of ε-caprolactone production using recombinant Escherichia coli containing cyclohexanone monooxygenase gene.

Won Heong Lee (Seoul National University, Korea)

p 21

Kinetic modeling of ace operon genetic regulation in Escherichia coli cells.

Kirill Peskov (Institute of theoretical and experimental biophysics RAS, Russia)

p 22

Comparison of the genome scale metabolic networks of Escherichia coli from different databases.

Hongwu Ma (The University of Edinburgh, UK)

p 23

Systems approach of Escherichia coli central metabolism-quantitative analysis of glycolysis and TCA cycle enzymes in transcriptional and translational levels.

Hitomi Dose (Keio University, Japan)

p 24

Integrative functional analysis of essential genes in Escherichia coli.

Natsuko Yamamoto (NAIST, Japan)

p 25

Comparative analysis of functional modules in the genomes of Escherichia coli.

Mi-Kyung Lee (Korea Research Institute of Bioscience and Biotechnology, Korea)

p 26

Role of RNase E in oxidative-stress protection and acid tolerance of Escherichia coli.

Ayako Takada (Tokyo Institute of Technology, Japan)

p 27

Functional comparison of the metabolic networks between Escherichia coli B and K-12.

Sung Ho Yoon (Korea Research Institute of Bioscience and Biotechnology, Korea)

p 28

MetaFluxNet2: an integrated environment for modeling and simulation of in silico metabolic network.

Hongseok Yun (Korea Advanced Institute of Science and Technology, Korea)

p 29

Design principles in Escherichia coli transcription network revealed by using a comprehensive library of fluorescent transcriptional reporters.

Alon Zaslaver (Weizmann Institute of Science, Israel)

p 30

Mathematical and metabolic analysis of succinate production in engineered Escherichia coli.

George N. Bennett (Rice University, USA)

p 31

Genetic modification of NADPH availability in Escherichia coli.

George N. Bennett (Rice University, USA)

p 32

A multi-omics analysis of Escherichia coli revealed its different strategies to keep stability of metabolic network.

Kenji Nakahigashi (Keio University, Japan)

p 33

Computational gene targeting strategy for biochemical production in Escherichia coli.

Tae Yong Kim (Korea Advanced Institute of Science and Technology, Korea)

p 34

In silico genome-scale analysis of the newly-sequenced hyperthermophilic bacterium, Thermotoga neapolitana.

Jin Sik Kim (Korea Advanced Institute of Science and Technology, Korea)

p 35

New technique for the economic production of polyhydroxybutyrate in Escherichia coli.

Il Lae Jung (Korea Atomic Energy Research Institute, Korea)

p 36

Polyamine as a signaling molecule controlling an adaptive mutation.

Il Lae Jung (Korea Atomic Energy Research Institute, Korea)

p 37

A research platform for integrated genomics of Escherichia coli B.

Seung-Won Lee (Korea Research Institute of Bioscience and Biotechnology, Korea)

p 38

The effect of growth media in the acid stress response of Escherichia coli.

Charles W. Penn (The University of Birmingham, UK)

p 39

Production of biologically active human fibroblast growth factors in Escherichia coli.

Song Young Kim (Daewoong Pharmaceutical Co., Korea)

p 40

WebCell: an integrative environment for modeling and simulation of cellular networks online.

Choamun Yun (Korea Advanced Institute of Science and Technology, Korea)

p 41

A Transcriptomic Comparison of Escherichia coli MG1655 and Enterohaemorrhagic E. coli O157:H7 (Sakai) Subjected To Heat and Oxidative Stresses Reveals Surprising Differences in Their Responses

Martin D. Goldberg (University of Birmingham, Edgbaston, UK)

p 42

Production of human bone morphogenetic protein-2 as inclusion body in Escherichia coli.

Oh-Byung Kwon (Daewoong Pharmaceutical Co., Korea)

p 43

Bacterial cytochrome P450 BM3 as a prototype for biocatalysts with human cytochrome P450 activities.

Chul-Ho Yun (Chonnam National University, Korea)

p 44

Factors involved in regulation of prodigiosin biosynthesis of the marine bacterium Hahella chejuensis.

Soon-Kyeong Kwon (Korea Research Institute of Bioscience and Biotechnology, Korea)

p 45

Structural implications of functional residues in the catalytic domain of RNase E.

Eun-Kyoung Shin (Chung-Ang University, Korea)

p 46

Identification and functional analysis of amino acid substitutions enabling RNase E hyperactive.

Ha-Young Go (Chung-Ang University, Korea)

p 47

Enhanced production of succinic acid by metabolically engineered Escherichia coli, based on Mannheimia succiniciproducens genome.

Hyohak Song (Korea Advanced Institute of Science and Technology, Korea)

p 48

Escherichia coli based RNase III barometer.

Jeong-Min Lee, Soo-Hyun Lee (Korea Research Institute of Bioscience and Biotechnology, Korea)

p 49

Hierarchical protein database for analyzing the proteomics data based on the mass spectrometry.

Kyung-Hoon Kwon (Korea Basic Science Institute, Korea)

p 50

PAIDB: a web-based information resource of pathogenicity islands.

Sung Ho Yoon (Korea Research Institute of Bioscience and Biotechnology, Korea)

p 51

Elucidating the regulatory system in response to phosphate starvation of Escherichia coli.

Jong Hwan Baek (Korea Advanced Institute of Science and Technology, Korea)

p 52

A post-genomic approach to the genetic basis of bacterial motility.

Hany S. Girgis (Princeton University, USA)

p 53

Assessment of Escherichia coli metabolism using constraints-based flux analysis and bayesian network analysis.

Hyun Uk Kim (Korea Advanced Institute of Science and Technology, Korea)

p 54

Improved proteome profiling method by inhibiting proteolysis with small heat shock proteins.

Jeong Wook Lee (Korea Advanced Institute of Science and Technology, Korea)

p 55

Metabolic engineering of Escherichia coli for L-valine production and its transcriptome analysis.

Jin Hwan Park (Korea Advanced Institute of Science and Technology, Korea)

p 56

In silico investigation of a dynamic model for central metabolism and amino acid biosynthesis networks in Escherichia coli.

Ui Sub Jung (Sogang University, Korea)

p 57

Comparative genomics of Escherichia coli and the enterobacteriacae.

Aaron E. Darling (University of Queensland, Australia)

p 58

Dynamic modeling of E. coli central metabolism and application of parameter estimation techniques.

Jinwon Lee (Sogang University, Korea)

p 59

Transpath: identification of activated pathways from microarray data

Dougu Nam (Korea Research Institute of Bioscience and Biotechnology

P 60

A Reassessment of the FNR Regulon and Transcriptomic Analysis of the Effects of Nitrate, Nitrite, NarXL, and NarQP as Escherichia coli K-12 Adapts from Aerobic to Anaerobic Growth

Tim W. Overton (The University of Birmingham, UK)